State-of-the-art Surveillance

Automation can improve biosecurity surveillance systems

 

The inventory of research outputs and resources can be found here:

State-of-the-art-surveillance 

This research is Completed
Environment Southland Senior Biosecurity Officer Randall Milne tests a prototype of the mobile reporting app. Image: Environment Southland

Overview Te Tirohanga Whānui

Surveillance is an essential part of protecting New Zealand’s economic assets and natural taonga from damaging exotic organisms.

Our government currently spends over $125 million a year on monitoring for biological threats. It’s an expensive process because it requires thousands of hours of highly skilled human labour.

As part of the BioHeritage National Science Challenge the State-of-the-art Surveillance team worked to develop prototype technologies that automated and improved surveillance results, while saving costs.

Entomologist Dr Carl Wardhaugh with an insect light trap used at the Port of Tauranga. Image: Scion.

Research Area Summary Te Whakarāpopototanga Kaupapa

Spectral imaging for urban tree health

Our research team used a camera mounted on a moving vehicle to monitor the health of our urban rākau (trees).

The camera took pictures of street trees every fortnight. Images were pre-processed to maintain people’s privacy (blurring cars, people, houses etc.) and then analysed by computer to identify what kind of trees each street had, and whether they looked damaged by pest or disease.

When we found sick trees we sent a biosecurity inspector to focus just on the damaged trees – saving time and money. It worked the other way, too: if our DNA project above discovered a new insect had entered the country, and we knew that it was a threat to a specific kind of tree, we’d have a map of where those trees are in our cities and could go inspect them.

Insect Soup: sampling eDNA with light traps

Our researchers installed UV light traps at the Port of Tauranga to help detect the arrival of foreign insects.

All of the insects caught were analysed in the lab by a process called High-Throughput Sequencing (HTS). This told us the DNA of every insect species caught in the trap.

If a new insect species or a known threat came into Tauranga, we knew where and when it was collected, and we could take steps to eradicate it.

Developing DNA diagnostic technologies like this allowed us to cost-effectively scale-up our efforts to find new pests early. This early detection is essential for protecting our natural and productive environments.

Dr Manpreet Dhami (Manaaki Whenua – Landcare Research) spoke about our eDNA research at this webinar:

eDNA research webinar

Co-leads Ngā kaiārahi ngātahi

Steve Pawson

Steve Pawson

Steve Pawson


University of Canterbury

Team Members Ngā kaimahi

  • Simon Bulman; Plant and Food Research
  • Andrew Cridge; Scion
  • Shaun Wilkinson; Wilderlab
  • Blair Robertson; University of Canterbury
  • Richard Green; University of Canterbury
  • Varvara Vetrova; University of Canterbury
  • Ye Chow Kuang; University of Waikato
  • Melanie Ooi; University of Waikato
  • Mike Duke; University of Waikato

Resource outputs from this programme

Webinar

Crazy & Ambitious 4 – 2024

A playlist of presentations given at New Zealand’s Biological Heritage Science Challenge conference, Crazy & Ambitious 3. 24 – 27 May 2022, at Te Papa,…
View Webinar
Webinar

Crazy & Ambitious 4: Te Tiriti-guided national DNA reference library (Day 2)

Online presentation from Crazy & Ambitious 4 (Day 2): Te Tiriti-guided national DNA reference library, with Manpreet Dhami, from Manaaki Whenua Landcare Research Part of…
View Webinar
Webinar

Crazy & Ambitious 4: Co-design for community surveillance

Online presentation from Crazy & Ambitious 4: Co-design for community surveillance, with Te Poari Newton, Stevee Raureti, Brayden Hohaia, and Serene Ratu, from Kāwai Kaimai.…
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Webinar

Crazy & Ambitious 4: Te Tiriti-guided national DNA reference library (Day 1)

Online presentation from Crazy & Ambitious 4 (Day 1): Te Tiriti-guided national DNA reference library, with Manpreet Dhami, Maanaki Whenua Landcare Research.
View Webinar
Webinar

Crazy & Ambitious 4: Surveillance – new tools and technologies for surveillance

Online quick-fire presentation from Crazy & Ambitious 4: Surveillance – new tools and technologies for surveillance, with Steve Pawson.
View Webinar
Summary

BRIEF: Evaluating New Technology for Biosecurity Surveillance

Biosecurity surveillance helps prevent the establishment of, control, and eradication of unwanted and damaging organisms in Aotearoa New Zealand. Existing surveillance either relies on the…
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Webinar

Crazy & Ambitious 3: State-Of-The-Art Surveillance

Presentations from State-Of-The-Art Surveillance: 1) Tama Blackburn (Ngāti Maniapoto; Taranaki Mounga) 2) Richard Green (University of Canterbury) 3) Manpreet Dhami (Manaaki Whenua – Landcare Research)…
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Publication

Multi-trap sampling of arthropod communities at ports of first entry informs biosecurity surveillance programs

Ports of first entry are high-risk locations where invasive species may arrive, establish, and cause wider potential environmental, economic, social, or cultural harm. Early detection…
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Summary

BRIEF: Find a Pest

How can we support early detection of new pests and increase our understanding of the distribution and density of existing pests? Through harnessing citizen science!
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Publication

Fast-tracking bespoke DNA reference database generation from museum collections for biomonitoring and conservation

Despite recent advances in high-throughput DNA sequencing technologies, a lack of locally relevant DNA reference databases limits the potential for DNA-based monitoring of biodiversity for…
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Webinar

State-Of-The-Art Surveillance webinar

Surveillance is an essential part of protecting New Zealand’s economic assets and natural taonga from damaging exotic organisms. To strengthen our biosecurity system, researchers at BioHeritage…
View Webinar

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