Host, Pathogen & Environment

Looking at the role environmental factors play on disease expression and severity, pathogen spread and establishment, as well as investigating plant pathogen genomes.

This research is Active

Overview Te Tirohanga Whānui

This research theme is focusing on the ‘disease triangle’: host susceptibility, the pathogen and the right environment for disease expression.

Plants and pathogens can both be influenced by a number of factors such as disturbance, topography, weather, soil type and pest control. These factors can, in turn, affect how the plant pathogens adapt to New Zealand’s environment.

Our team are investigating the role environmental factors play on disease expression and severity, as well as researching the pathogen genomes. The knowledge we gain will contribute to improving surveillance, control, management and conservation efforts, and we hope to discover new ways to mediate these diseases.

We are testing an innovative kaupapa Māori programme known as Te Whakahononga in this theme.

This provides the mechanism for linking scientists to mana whenua in affected kauri and myrtle ngāhere, while enabling mana whenua to lead field work in their rohe and apply mātauranga based assessments of ngahere health and relationships.

Schematic diagram of the Host, Pathogen and Environment theme where the relationships between the pathogens Phytophthora agathidicida and Austropuccinia psidii, their hosts and the ngahere (forest) environment will be determined.  

Host, Pathogen & Environment 2022

Research Area Summary Te Whakarāpopototanga Kaupapa

Te Whakahononga (linking relationships)

All Ngā Rākau Taketake (NRT) research requires the integration of mātauranga Māori and kaupapa Māori approaches and activities. However, this runs the risk of overlapping across ‘themes’ – duplicating effort and engagement with mana whenua.

To avoid this problem, NRT Māori co-leads have developed a cross-cutting programme to provide for appropriate and robust engagement, in which mana whenua have a clear partnership stake.

The programme is responsible for several pieces of work:

  • Cultural authority arrangements
  • Rohe-based Biological Management Areas (BMAs) and Data Information and Taonga Platforms
  • Ngahere Health Indicator frameworks
  • Cultural Impact Assessment templates
  • A hui/wānanga schedule and establishment of Reflexive Monitors Kahui (tohunga, kaumatua, mātauranga experts).

Within the Host, Pathogen & Environment workstream we are particularly interested in the effects of climate change on kauri, and what these effects mean for kauri infected with kauri dieback. To learn more about this we are partnering with mana whenua in BMAs, a number of whom have previously been involved with the Healthy Trees, Healthy Futures programme (led by Scion).


Koanga/Tipu o te kauri

In this workstream we are looking at the effects of temperature, bird song and wind on tipu (bud burst) and radial growth. We will train kaitiaki from across the motu (country) to record growth and events such as bud burst in a consistent way. We can then compare this data with temperature and get a clearer idea of how climate change across the country is affecting our kauri.

We are also planning on repatriating some of our taonga kauri seedlings which are currently stored in Rotorua. We will plant them out in their rohe and monitor their growth in situ. This will align closely with the Tohu O Te Maramataka project.


Role and epidemiology of Phytophthora

This research team are establishing long-term monitoring sites to track the rate of Phytophthora agathidicida spread. This includes how it spreads through the soil – eventually across the landscape – and between cells within each kauri tree.

This information will tell us more about the vectors that can transport the pathogen around a forest. It will show us how long it takes between a tree getting infected and becoming sick, as well as provide more details about the different stages of illness.

We will also be looking at the role of other Phytophthora species in kauri decline.


Austropuccinia psidii epidemiology

The pathogen that causes myrtle rust is a fungus and spreads through the air, so the patterns of infection are very different to kauri dieback (which spreads through the soil).

In this workstream we are using field monitoring, experimentation and mathematical modelling to understand how myrtle rust spreads within the entire forest system, throughout the year.

How does the pathogen spread from one plant to another? When will new growth appear on the plant, making it susceptible to infection? These are the types of questions we need answers to, to be able to predict how myrtle rust will spread across Aotearoa and target our management accordingly.

This information will allow us to develop tools, information resources and control methods to help affected people better understand what is going on with myrtle rust in their ngahere.


Deciphering the blueprint of a kauri killer

This research team is using a new, high-quality P. agathidicida genome sequence, together with existing and new gene expression data, to discover how the pathogen:

  • finds and attaches to its host
  • invades the host and causes disease symptoms
  • responds to other plants in the environment

This information will open doors to new ideas for disease control and will help in the fight to save our kauri.


Targeting Austropuccinia psidii effectors

An effector protein allows the pathogen to enter the cell of its host and suppresses the host’s immune response. This research team is expressing and purifying the effector proteins from A. psidii, which will enable us to look their structure and specific function. We will then be able to determine the receptor proteins in host plants.

This information will help to develop new, targeted ways of controlling the spread of A. psidii and the disease it causes, myrtle rust.

Highlights Ngā Mahi Whakahirahira

  • In collaboration with Auckland Council and Te Kawerau a Maki, we have now processed ~ 800 soil samples from the Waitākere Ranges 2021 surveillance programme.
  • We have identified a possible long-term monitoring plot within the Matuku Reserve, Waitākere Ranges.
  • During the summer of 2020/2021 we identified that warm winter temperatures allowed myrtle rust to continue infecting plants throughout winter, particularly in more northern areas. This indicates that a warming climate will increase the future risk of myrtle rust to Aotearoa.
  • We have implemented the climatic risk model, allowing public access to myrtle rust weather risk information.
  • We have assembled a new, high-quality Phytophthora agathidicida genome. This will allow us to progress our understanding of both the pathogen and the disease it causes.
  • We have expressed and purified the first Austropuccinia psidii effector. This will progress our understanding of how myrtle rust occurs and help find new strategies to stop its spread.

Find out more about myrtle rust research  in Aotearoa:

Myrtle Rust monitoring in Rotorua

Co-leads Ngā kaiārahi ngātahi


Juliane Chetham

Juliane Chetham

Patuharakeke, Ngātiwai, Ngāpuhi
Chetham Consulting Ltd

Nari Williams

Nari Williams

Plant and Food Research

Team Members Ngā kaimahi

  • Dave Milner – Ngāti Wai, Ngāti Whatua, Ngāpuhi, Ngāti Porou; Perception Planning Limited
  • Waitangi Wood – Ngatirua, Ngāti Awa, Ngāti Kahu, Ngāpuhi Nui Tonu  ; Independent
  • Gancho Slavov; Scion
  • Ian Horner; Plant and Food Research
  • Rob Beresford; Plant and Food Research
  • Rosie Bradshaw; Massey University

Research Partners Ngā hoa pātui rangahau

Resource outputs from this programme


Vulnerability of New Zealand Myrtaceae species to natural infection by Austropuccinia psidii (myrtle rust)

Current knowledge about the vulnerability of New Zealand’s native myrtle species to Austropuccinia psidii comes from resistance screening of young seedlings performed with artificial inoculation…
View Report

Understanding a taonga killer: how does Austropuccinia psidii cause myrtle rust? – Grant Smith

Presented as part of the Kaurilands Summit 2023, hosted by Ngā Rākau Taketake.   To find out more about the Host, Pathogen & Environment research…
View Presentation

Spatial variation in Phytophthora detection within infected areas – Nari Williams

Presented as part of the Kaurilands Summit 2023, hosted by Ngā Rākau Taketake.   To find out more about the Host, Pathogen & Environment research…
View Presentation

Is provenance or phylogeny a better predictor of growth and survival of a soil pathogen in leaf litter?

Exotic plants have the potential to increase pathogen inoculum that can affect native plants. New Zealand’s iconic kauri tree (Agathis australis) is threatened by disease…
View Publication

Resistance of New Zealand Provenance Leptospermum scoparium, Kunzea robusta, Kunzea linearis, and Metrosideros excelsa to Austropuccinia psidii

Resistance to the pandemic strain of Austropuccinia psidii was identified in New Zealand provenance Leptospermum scoparium, Kunzea robusta, and K. linearis plants. Only 1 Metrosideros…
View Publication

Comparative genomic analysis of 31 Phytophthora genomes reveal genome plasticity and horizontal gene transfer

Phytophthora species are oomycete plant pathogens that cause great economic and ecological impacts. The Phytophthora genus includes over 180 known species, infecting a wide range…
View Publication
Data Set

Variability in phosphite sensitivity observed within and between seven Phytophthora species

Phosphite is used to control and manage many phytophthora diseases in horticultural systems worldwide and natural ecosystems in Australia, Africa, New Zealand and parts of…
View Data Set
Tool or Model

Myrtle Rust Science Stocktake

A list of past and current research focussed on biology, impacts and management of myrtle rust is now available. This updated stocktake builds on work…
View Tool or Model
Tool or Model

Kauri Dieback Science Stocktake

A list of past and current research focused on biology, impacts and management of kauri dieback is now available. This updated stocktake builds on work…
View Tool or Model

Myrtle Rust monitoring in Rotorua

We’re in the field with Roanne Sutherland from Scion, talking about monitoring myrtle rust. This plant pathogen arrived in Aotearoa in 2017 and has been…
View Video

Host, Pathogen & Environment 2022

The ‘Host, Pathogen and Environment’ team is focusing on the ‘disease triangle’: host susceptibility, the pathogen and the right environment for disease expression. They are…
View Video

Trans-Tasman collaboration unlocks genetic secrets behind myrtle rust

In a trans-Tasman collaboration, scientists have sequenced the genome of Austropuccinia psidii, the fungus responsible for the disease myrtle rust, and produced the world’s largest assembled…
View Media

Newly-found myrtle rust putting Waitakere Ranges at risk

First, it was kauri dieback, now another disease is putting Auckland’s Waitakere Ranges under threat, myrtle rust has been found there for the first time.…
View Media

Myrtle rust found on mānuka seeds

Researchers have found the plant disease myrtle rust on mānuka seeds. RNZ spoke to Robert Beresford (Plant & Food Research).
View Media

Myrtle rust found in Christchurch, more expected in region

Myrtle rust has been found on a hedge in Ōtautahi-Christchurch, the furthest south an established infection of the plant disease has been seen. RNZ spoke…
View Media

‘Instruction manual’ to kauri dieback pathogen uncovered

In a world first, researchers have decoded the genome of the pathogen that causes kauri dieback. RNZ spoke to Nari Williams (Plant & Food Research).
View Media

Have you found this research useful? Please help the cause by sharing

Scroll to Top